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44deec91a9
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remove filterreg registration function as it did not work well
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2021-07-23 13:38:11 +02:00 |
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1bee0c4b50
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add proper offset and fix missing use of self.max_distance
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2021-07-23 13:04:33 +02:00 |
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1de42f1e5d
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add icp registration however only 2d transformation matrix is supported yet
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2021-07-22 16:11:52 +02:00 |
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02ae4f1784
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fix package setup
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2021-07-22 12:32:26 +02:00 |
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75f0563069
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update the demo notebooks to give better examples
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2021-07-22 12:18:08 +02:00 |
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515abcc187
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add documentation for transformation
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2021-07-22 11:38:38 +02:00 |
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b32451c73c
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add documentation to all registration classes
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2021-07-22 11:34:05 +02:00 |
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334f908e82
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add documentation to peak_finder
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2021-07-22 10:13:11 +02:00 |
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e4bdf315d6
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add pydocs to situ tile
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2021-07-22 09:56:36 +02:00 |
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8cacf9d3df
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improve pydoc for SituImage
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2021-07-22 09:40:32 +02:00 |
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f17aa2153b
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add demo notebook with artificial test images
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2021-07-21 19:04:45 +02:00 |
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1574244670
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change channel registration to be performed on tiles
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2021-07-21 18:50:56 +02:00 |
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60d7166c5b
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add round registration that uses all channels
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2021-07-21 18:31:40 +02:00 |
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53261f9ae1
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refactor: move peak_finder to registration
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2021-07-19 12:13:43 +02:00 |
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f04ff2a296
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add todo
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2021-07-19 11:03:20 +02:00 |
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b122389bad
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swap x and y axis of peak finder to fix image display (this might however cause issues with the registration)
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2021-07-19 10:51:42 +02:00 |
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3920451644
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improve peak visualisation as it's now drawn in colour with one dark and one bright colour
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2021-07-19 10:30:19 +02:00 |
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c2b092e6ec
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convert images to uint8 for visualisation
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2021-07-19 10:00:49 +02:00 |
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5583cb622d
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fix combined registration does not do channel registration
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2021-07-15 11:01:49 +02:00 |
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b70b5a6a67
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rework transformations to resolve circular dependencies
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2021-07-15 09:44:40 +02:00 |
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8ff57e9c8d
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make more classes abstract
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2021-07-14 16:42:51 +02:00 |
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7f99d56cc1
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implement application of transformations
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2021-07-14 16:41:48 +02:00 |
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d9ab104612
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add type hints to transformations
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2021-07-14 11:59:35 +02:00 |
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eeca8b7ad9
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add type hints to registrations
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2021-07-14 11:49:06 +02:00 |
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10f652ede1
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add type hints to tile
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2021-07-14 11:30:57 +02:00 |
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c2b3b46fc4
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add typehint to situ image and update docstring
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2021-07-14 11:24:55 +02:00 |
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f1e801d07e
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add todo to round registration
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2021-07-14 11:03:30 +02:00 |
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193dc059a5
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add tile registration, however no all methods are implemented yet
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2021-07-14 11:03:16 +02:00 |
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1d0385e2f3
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implement registration fo rounds
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2021-07-13 13:18:41 +02:00 |
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c2c39dc462
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move peak finder parameters into separate class
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2021-07-13 11:38:13 +02:00 |
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5e1875db40
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add transformations to tile
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2021-07-13 10:15:26 +02:00 |
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f447157d35
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add channel transformations into situ_image class
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2021-07-13 10:11:41 +02:00 |
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5bac4eb2bd
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add channel count and round count
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2021-07-12 18:56:06 +02:00 |
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29c9555755
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redo registration to be more generic
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2021-07-12 18:39:42 +02:00 |
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5fc4b75b6c
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rename tile and add useful getters
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2021-07-12 18:39:19 +02:00 |
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ffd7c23ca4
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create python package
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2021-07-12 16:16:58 +02:00 |
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4ec8b766cd
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add package info and licencse
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2021-07-12 15:59:32 +02:00 |
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93c84e731d
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autoformat code and add missing imports
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2021-07-12 15:54:50 +02:00 |
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85e2edb8a5
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move tests to corresponding folder
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2021-07-12 15:46:45 +02:00 |
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235660c16d
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rename and move channel registration
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2021-07-12 15:42:14 +02:00 |
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54995658b8
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add basic tests for Dim expansion and reduction and added imports
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2021-07-12 15:41:47 +02:00 |
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5468187e38
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ignore vscode settings
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2021-07-12 15:40:43 +02:00 |
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7ec6879f91
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add modules
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2021-07-12 15:40:01 +02:00 |
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9fb8436ea3
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initial (non working) code and structure
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2021-07-09 12:38:08 +02:00 |
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Hannes Kuchelmeister
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43c4f026a7
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Initial commit
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2021-07-09 11:54:05 +02:00 |
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