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• 1358c98171 fix bug in channel registration not respecting changed parameteres main Hannes Kuchelmeister 2021-10-17 18:26:08 +02:00
• 7b4c13c133 change return of get_channel in tile to remove unreachable line Hannes Kuchelmeister 2021-10-17 16:34:17 +02:00
• e7dbe2c501 add notebooks and files that contain sensitive data to gitignore Hannes Kuchelmeister 2021-10-17 16:07:58 +02:00
• 1279ac693c remove probreg import as its not used anymore Hannes Kuchelmeister 2021-10-17 15:46:28 +02:00
• 188dc62fad add showing peaks with scatterplot Hannes F. Kuchelmeister 2021-07-23 14:34:08 +02:00
• 44deec91a9 remove filterreg registration function as it did not work well Hannes F. Kuchelmeister 2021-07-23 13:38:11 +02:00
• 1bee0c4b50 add proper offset and fix missing use of self.max_distance Hannes F. Kuchelmeister 2021-07-23 13:04:33 +02:00
• 1de42f1e5d add icp registration however only 2d transformation matrix is supported yet Hannes F. Kuchelmeister 2021-07-22 16:11:52 +02:00
• 02ae4f1784 fix package setup Hannes F. Kuchelmeister 2021-07-22 12:32:26 +02:00
• 75f0563069 update the demo notebooks to give better examples Hannes F. Kuchelmeister 2021-07-22 12:18:08 +02:00
• 515abcc187 add documentation for transformation Hannes F. Kuchelmeister 2021-07-22 11:38:38 +02:00
• b32451c73c add documentation to all registration classes Hannes F. Kuchelmeister 2021-07-22 11:34:05 +02:00
• 334f908e82 add documentation to peak_finder Hannes F. Kuchelmeister 2021-07-22 10:07:24 +02:00
• e4bdf315d6 add pydocs to situ tile Hannes F. Kuchelmeister 2021-07-22 09:56:36 +02:00
• 8cacf9d3df improve pydoc for SituImage Hannes F. Kuchelmeister 2021-07-22 09:40:32 +02:00
• f17aa2153b add demo notebook with artificial test images Hannes F. Kuchelmeister 2021-07-21 19:04:45 +02:00
• 1574244670 change channel registration to be performed on tiles Hannes F. Kuchelmeister 2021-07-21 18:50:56 +02:00
• 60d7166c5b add round registration that uses all channels Hannes F. Kuchelmeister 2021-07-21 18:31:40 +02:00
• 53261f9ae1 refactor: move peak_finder to registration Hannes F. Kuchelmeister 2021-07-19 12:13:43 +02:00
• f04ff2a296 add todo Hannes F. Kuchelmeister 2021-07-19 11:03:20 +02:00
• b122389bad swap x and y axis of peak finder to fix image display (this might however cause issues with the registration) Hannes F. Kuchelmeister 2021-07-19 10:51:42 +02:00
• 3920451644 improve peak visualisation as it's now drawn in colour with one dark and one bright colour Hannes F. Kuchelmeister 2021-07-19 10:30:19 +02:00
• c2b092e6ec convert images to uint8 for visualisation Hannes F. Kuchelmeister 2021-07-19 10:00:49 +02:00
• 5583cb622d fix combined registration does not do channel registration Hannes F. Kuchelmeister 2021-07-15 11:01:49 +02:00
• b70b5a6a67 rework transformations to resolve circular dependencies Hannes F. Kuchelmeister 2021-07-15 09:44:40 +02:00
• 8ff57e9c8d make more classes abstract Hannes F. Kuchelmeister 2021-07-14 16:42:51 +02:00
• 7f99d56cc1 implement application of transformations Hannes F. Kuchelmeister 2021-07-14 16:41:48 +02:00
• d9ab104612 add type hints to transformations Hannes F. Kuchelmeister 2021-07-14 11:59:35 +02:00
• eeca8b7ad9 add type hints to registrations Hannes F. Kuchelmeister 2021-07-14 11:49:06 +02:00
• 10f652ede1 add type hints to tile Hannes F. Kuchelmeister 2021-07-14 11:30:57 +02:00
• c2b3b46fc4 add typehint to situ image and update docstring Hannes F. Kuchelmeister 2021-07-14 11:24:55 +02:00
• f1e801d07e add todo to round registration Hannes F. Kuchelmeister 2021-07-14 11:03:30 +02:00
• 193dc059a5 add tile registration, however no all methods are implemented yet Hannes F. Kuchelmeister 2021-07-14 11:03:16 +02:00
• 1d0385e2f3 implement registration fo rounds Hannes F. Kuchelmeister 2021-07-13 13:18:41 +02:00
• c2c39dc462 move peak finder parameters into separate class Hannes F. Kuchelmeister 2021-07-13 11:38:13 +02:00
• 5e1875db40 add transformations to tile Hannes F. Kuchelmeister 2021-07-13 10:15:26 +02:00
• f447157d35 add channel transformations into situ_image class Hannes F. Kuchelmeister 2021-07-13 10:11:41 +02:00
• 5bac4eb2bd add channel count and round count Hannes F. Kuchelmeister 2021-07-12 18:56:06 +02:00
• 29c9555755 redo registration to be more generic Hannes F. Kuchelmeister 2021-07-12 18:39:42 +02:00
• 5fc4b75b6c rename tile and add useful getters Hannes F. Kuchelmeister 2021-07-12 18:39:19 +02:00
• ffd7c23ca4 create python package Hannes F. Kuchelmeister 2021-07-12 16:16:58 +02:00
• 4ec8b766cd add package info and licencse Hannes F. Kuchelmeister 2021-07-12 15:59:32 +02:00
• 93c84e731d autoformat code and add missing imports Hannes F. Kuchelmeister 2021-07-12 15:54:50 +02:00
• 85e2edb8a5 move tests to corresponding folder Hannes F. Kuchelmeister 2021-07-12 15:46:45 +02:00
• 235660c16d rename and move channel registration Hannes F. Kuchelmeister 2021-07-12 15:42:14 +02:00
• 54995658b8 add basic tests for Dim expansion and reduction and added imports Hannes F. Kuchelmeister 2021-07-12 15:41:47 +02:00
• 5468187e38 ignore vscode settings Hannes F. Kuchelmeister 2021-07-12 15:40:43 +02:00
• 7ec6879f91 add modules Hannes F. Kuchelmeister 2021-07-12 15:40:01 +02:00
• 9fb8436ea3 initial (non working) code and structure Hannes Kuchelmeister 2021-07-09 12:38:08 +02:00
• 43c4f026a7 Initial commit Hannes Kuchelmeister 2021-07-09 11:54:05 +02:00