13hannes11/situr
1
0
Fork 0
mirror of https://github.com/13hannes11/situr.git synced 2024-09-03 20:50:58 +02:00
Code Issues Projects Releases Wiki Activity

fix bug in channel registration not respecting changed parameteres

Browse Source
This commit is contained in:
Hannes Kuchelmeister
2021-10-17 18:26:08 +02:00
parent 7b4c13c133
commit 1358c98171
2 changed files with 130 additions and 128 deletions
Download Patch File Download Diff File Expand all files Collapse all files

253
notebook/tile_demo_test.ipynb
View File

File diff suppressed because one or more lines are too long

3
situr/registration/channel_registration.py
View File

@@ -45,7 +45,8 @@ class ChannelRegistration(Registration):
reference_channel (int, optional): the reference channel that all channels are
registered against. Defaults to 0.
"""
registration = SituImageChannelRegistration()
registration = SituImageChannelRegistration(self.registration_function, peak_finder=self.peak_finder)
# For each channel (except nucleus) compute transform compared to reference_channel
# Add Channel transformation to Channel
for round in range(tile.get_round_count()):