Restrucuted source files

This commit is contained in:
Deepthi Pathare
2021-05-10 13:23:45 +02:00
parent 88350876d8
commit eea9aa4eda
7 changed files with 310 additions and 410 deletions

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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import os
import numpy as np
import pandas as pd
from itertools import product
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from neupy import algorithms
# Loading German Parliament Votes
def load_german_data():
title_file = "filename_to_titles.csv"
vote_counter = -1
data = pd.DataFrame()
name_column = 'Bezeichnung'
party_column = 'Fraktion/Gruppe'
vote_column_to_title = {}
voting_features = ['ja', 'nein', 'Enthaltung', 'ungültig']
for dirname, _, filenames in os.walk('./de/csv'):
for filename in filenames:
if filename != title_file:
vote_counter += 1
df = pd.read_csv(os.path.join(dirname, filename))
# Give each voting behaviour type an identifier from 0 to len(voting_features) - 1
for i, feature in enumerate(voting_features):
df[feature] *= i
vote_column_name = f'vote_{vote_counter}'
# Map column name of vote to filename -> allows retrieving what the vote was about
vote_column_to_title[vote_column_name] = filename
# add feature for the vote
df[vote_column_name] = df[voting_features].sum(axis=1)
if data.empty:
# if first file that is loaded set data equal to data from first file
data = df[[name_column, party_column, vote_column_name]]
else:
# merge data with already loaded data
data = data.merge(df[[name_column, vote_column_name]], on=name_column)
print(vote_column_to_title)
print(data)
return data
# Loading UK Parliament Votes
def load_uk_data():
# Preprocess data
vote_counter = -1
data = pd.DataFrame()
name_column = 'Member'
party_column = 'Party'
vote_column = 'Vote'
column_to_filename = {}
voting_features = {'Aye':0, 'Teller - Ayes':0, 'No':1, 'Teller - Noes':1, 'No Vote Recorded':2}
for dirname, _, filenames in os.walk('./uk/csv'):
for filename in filenames:
vote_counter += 1
# Read title rows
# sep is set to new line so it never splits up the title cells
title_df = pd.read_csv(os.path.join(dirname, filename), sep='\n',nrows=(3),skip_blank_lines=True,header=None)
# Read data rows
df = pd.read_csv(os.path.join(dirname, filename),skiprows=(10))
# Give each voting behaviour type an identifier from 0 to len(voting_features) - 1
df[vote_column].replace(voting_features, inplace=True)
#Replace the vote column name
vote_column_name = f'vote_{vote_counter}'
df=df.rename(columns={vote_column:vote_column_name})
# Map column name of vote to title -> allows retrieving what the vote was about
column_to_filename[vote_column_name] = title_df.iat[2,0]
if data.empty:
# if first file that is loaded set data equal to data from first file
data = df[[name_column, party_column, vote_column_name]]
else:
# merge data with already loaded data
data = data.merge(df[[name_column, vote_column_name]], on=name_column)
print(column_to_filename)
print(data)
return data
# Heatmap
def iter_neighbours(weights, hexagon=False):
_, grid_height, grid_width = weights.shape
hexagon_even_actions = ((-1, 0), (0, -1), (1, 0), (0, 1), (1, 1), (-1, 1))
hexagon_odd_actions = ((-1, 0), (0, -1), (1, 0), (0, 1), (-1, -1), (1, -1))
rectangle_actions = ((-1, 0), (0, -1), (1, 0), (0, 1))
for neuron_x, neuron_y in product(range(grid_height), range(grid_width)):
neighbours = []
if hexagon and neuron_x % 2 == 1:
actions = hexagon_even_actions
elif hexagon:
actions = hexagon_odd_actions
else:
actions = rectangle_actions
for shift_x, shift_y in actions:
neigbour_x = neuron_x + shift_x
neigbour_y = neuron_y + shift_y
if 0 <= neigbour_x < grid_height and 0 <= neigbour_y < grid_width:
neighbours.append((neigbour_x, neigbour_y))
yield (neuron_x, neuron_y), neighbours
def compute_heatmap(weight, grid_height, grid_width):
heatmap = np.zeros((grid_height, grid_width))
for (neuron_x, neuron_y), neighbours in iter_neighbours(weight):
total_distance = 0
for (neigbour_x, neigbour_y) in neighbours:
neuron_vec = weight[:, neuron_x, neuron_y]
neigbour_vec = weight[:, neigbour_x, neigbour_y]
distance = np.linalg.norm(neuron_vec - neigbour_vec)
total_distance += distance
avg_distance = total_distance / len(neighbours)
heatmap[neuron_x, neuron_y] = avg_distance
return heatmap
def plot_hoverscatter(x, y, labels, colors, cmap = plt.cm.RdYlGn):
fig,ax = plt.subplots()
ANNOTATION_DISTANCE = 5
TRANSPARENCY = 0.8
scatterplot = plt.scatter(x,y,c=colors, s=5, cmap=cmap)
annot = ax.annotate("", xy=(0,0),
xytext=(ANNOTATION_DISTANCE, ANNOTATION_DISTANCE),
textcoords="offset points",
bbox=dict(boxstyle="Square"))
annot.set_visible(False)
def update_annot(ind):
index = ind["ind"][0]
pos = scatterplot.get_offsets()[index]
annot.xy = pos
text = f'{labels[index]}'
annot.set_text(text)
annot.get_bbox_patch().set_facecolor(cmap(colors[index]))
annot.get_bbox_patch().set_alpha(TRANSPARENCY)
def hover(event):
vis = annot.get_visible()
if event.inaxes == ax:
cont, ind = scatterplot.contains(event)
if cont:
update_annot(ind)
annot.set_visible(True)
fig.canvas.draw_idle()
else:
if vis:
annot.set_visible(False)
fig.canvas.draw_idle()
fig.canvas.mpl_connect("motion_notify_event", hover)
#plt.show()
def plot_mps(names, xs, ys, party_affiliation):
# converting parties to numeric format
party_index_mapping, party_ids = np.unique(party_affiliation, return_inverse=True)
# add random offset to show points that are in the same location
ys_disp = ys + np.random.rand(ys.shape[0])
xs_disp = xs + np.random.rand(xs.shape[0])
parties = party_index_mapping[party_ids]
plot_hoverscatter(xs_disp, ys_disp, data[:,0] + " (" + parties + ")", party_ids)
def plot_parties(xs, ys, party_affiliation):
cmap = plt.cm.RdYlGn
# converting parties to numeric format
party_index_mapping, party_ids = np.unique(party_affiliation, return_inverse=True)
# calculate average position of party
party_count = np.zeros(party_index_mapping.shape[0])
party_xs = np.zeros(party_index_mapping.shape[0])
party_ys = np.zeros(party_index_mapping.shape[0])
for x, y, party_id in zip(xs, ys, party_ids):
party_xs[party_id] += x
party_ys[party_id] += y
party_count[party_id] += 1
party_xs /= party_count
party_ys /= party_count
plt.figure()
party_colors=np.array(range(len(party_index_mapping)))
plt.scatter(party_xs, party_ys, c=party_colors, cmap=cmap)
# plotting labels
offset = 0.01
for x,y, party in zip(party_xs, party_ys, party_index_mapping):
plt.text(x + offset, y + offset, party)
#Simple SOFM for German
plt.style.use('ggplot')
# Load data
data = load_german_data().to_numpy()
X = data[:,2:]
print(X)
inp = X.shape[1] # No of features (bill count)
h = 10 # Grid height
w = 10 # Grid width
rad = 2 # Neighbour radius
ep = 300 # No of epochs
# Create SOFM
sofmnet = algorithms.SOFM(
n_inputs=inp,
step=0.5,
show_epoch=100,
shuffle_data=True,
verbose=True,
learning_radius=rad,
features_grid=(h,w),
)
sofmnet.train(X, epochs=ep)
#Visualizing Output
plt.figure()
weight = sofmnet.weight.reshape((sofmnet.n_inputs, h, w))
heatmap = compute_heatmap(weight, h, w)
plt.imshow(heatmap, cmap='Greys_r', interpolation='nearest')
plt.axis('off')
plt.colorbar()
plt.show()
# predicting mp positions
prediction = sofmnet.predict(X)
print(f'prediction: {prediction}')
# converting to x and y coordinates
ys, xs = np.unravel_index(np.argmax(prediction, axis=1), (h, w))
# plotting mps
plot_mps(data[:,0], xs, ys, data[:,1])
plt.show()
# plotting parties
plot_parties(xs, ys, data[:,1])
plt.show()
#Simple SOFM for UK
plt.style.use('ggplot')
# Load data
data = load_uk_data().to_numpy()
X = data[:,2:]
print(X)
inp = X.shape[1] # No of features (bill count)
h = 30 # Grid height
w = 30 # Grid width
rad = 3 # Neighbour radius
ep = 100 # No of epochs
# Create SOFM
sofmnet = algorithms.SOFM(
n_inputs=inp,
step=0.5,
show_epoch=20,
shuffle_data=True,
verbose=True,
learning_radius=rad,
features_grid=(h,w),
)
sofmnet.train(X, epochs=ep)
#Visualizing Output
'''
fig = plt.figure()
ax = plt.axes(projection='3d')
ax.scatter3D(*sofmnet.weight, label='SOFM Weights')
ax.scatter3D(*X.T, label='Input');
ax.set_xlabel('vote_0')
ax.set_ylabel('vote_1')
ax.set_zlabel('vote_2')
ax.legend()
plt.show()
'''
# predicting mp positions
prediction = sofmnet.predict(X)
print(f'prediction: {prediction}')
# converting to x and y coordinates
ys, xs = np.unravel_index(np.argmax(prediction, axis=1), (h, w))
# plotting mps
plot_mps(data[:,0], xs, ys, data[:,1])
plt.show()
# plotting parties
plot_parties(xs, ys, data[:,1])
plt.show()

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german_analysis.py Executable file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import load_data as ld
import voting_analysis as va
# Load data
data = ld.load_german_data().to_numpy()
X = data[:,2:]
# Train model
grid_h = 10 # Grid height
grid_w = 10 # Grid width
radius = 2 # Neighbour radius
step = 0.5
ep = 300 # No of epochs
model = va.train_model(X, grid_h, grid_w, radius, step, ep)
# Predict and visualize output
va.predict(model, data, grid_h, grid_w)

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load_data.py Executable file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import os
import pandas as pd
import numpy as np
def load_german_data():
"""
Load German Parliament data
return : Data with columns [Member, Party, vote_0, vote_1 etc]
"""
title_file = "filename_to_titles.csv"
vote_counter = -1
data = pd.DataFrame()
name_column_g = 'Bezeichnung'
party_column_g = 'Fraktion/Gruppe'
name_column = 'Member'
party_column = 'Party'
vote_column_to_title = {}
voting_features = ['ja', 'nein', 'Enthaltung', 'ungültig']
for dirname, _, filenames in os.walk('./de/csv'):
for filename in filenames:
if filename != title_file:
vote_counter += 1
df = pd.read_csv(os.path.join(dirname, filename))
# Give each voting behaviour type an identifier from 0 to len(voting_features) - 1
for i, feature in enumerate(voting_features):
df[feature] *= i
vote_column_name = f'vote_{vote_counter}'
# Map column name of vote to filename -> allows retrieving what the vote was about
vote_column_to_title[vote_column_name] = filename
# add feature for the vote
df[vote_column_name] = df[voting_features].sum(axis=1)
df=df.rename(columns={name_column_g:name_column,party_column_g:party_column})
if data.empty:
# if first file that is loaded set data equal to data from first file
data = df[[name_column, party_column, vote_column_name]]
else:
# merge data with already loaded data
data = data.merge(df[[name_column, vote_column_name]], on=name_column)
print(data)
return data
def load_uk_data():
"""
Load German Parliament data
return : Data with columns [Member, Party, vote_0, vote_1 etc]
"""
# Preprocess data
vote_counter = -1
data = pd.DataFrame()
name_column = 'Member'
party_column = 'Party'
vote_column = 'Vote'
column_to_filename = {}
voting_features = {'Aye':0, 'Teller - Ayes':0, 'No':1, 'Teller - Noes':1, 'No Vote Recorded':2}
for dirname, _, filenames in os.walk('./uk/csv'):
for filename in filenames:
vote_counter += 1
# Read title rows
# sep is set to new line so it never splits up the title cells
title_df = pd.read_csv(os.path.join(dirname, filename), sep='\n',nrows=(3),skip_blank_lines=True,header=None)
# Read data rows
df = pd.read_csv(os.path.join(dirname, filename),skiprows=(10))
# Give each voting behaviour type an identifier from 0 to len(voting_features) - 1
df[vote_column].replace(voting_features, inplace=True)
#Replace the vote column name
vote_column_name = f'vote_{vote_counter}'
df=df.rename(columns={vote_column:vote_column_name})
# Map column name of vote to title -> allows retrieving what the vote was about
column_to_filename[vote_column_name] = title_df.iat[2,0]
if data.empty:
# if first file that is loaded set data equal to data from first file
data = df[[name_column, party_column, vote_column_name]]
else:
# merge data with already loaded data
data = data.merge(df[[name_column, vote_column_name]], on=name_column)
print(data)
return data

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import pandas as pd
import os
title_file = "filename_to_titles.csv"
# Preprocess data
vote_counter = -1
data = pd.DataFrame()
name_column = 'Bezeichnung'
# Load filename to
filename_to_title_map = {}
with open(os.path.join("./de/csv/", title_file), 'r') as file:
for line in file.readlines():
filename, title = line.split(';', 2)
filename_to_title_map[filename] = title
vote_column_to_title = {}
voting_features = ['ja', 'nein', 'Enthaltung', 'ungültig']
for dirname, _, filenames in os.walk('./de/csv'):
for filename in filenames:
if filename != title_file:
vote_counter += 1
print(os.path.join(dirname, filename))
df = pd.read_csv(os.path.join(dirname, filename))
# Give each voting behaviour type an identifier from 0 to len(voting_features) - 1
for i, feature in enumerate(voting_features):
df[feature] *= i
vote_column_name = f'vote_{vote_counter}'
# Map column name of vote to filename -> allows retrieving what the vote was about
vote_column_to_title[vote_column_name] = filename_to_title_map[filename]
# add feature for the vote
df[vote_column_name] = df[voting_features].sum(axis=1)
if data.empty:
# if first file that is loaded set data equal to data from first file
data = df[[name_column, vote_column_name]]
else:
# merge data with already loaded data
data = data.merge(df[[name_column, vote_column_name]], on=name_column)
print(vote_column_to_title)
print(data)

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import pandas as pd
import os
# Preprocess data
vote_counter = -1
data = pd.DataFrame()
name_column = 'Member'
vote_column = 'Vote'
vote_column_to_title = {}
voting_features = {'Aye':0, 'No':1, 'No Vote Recorded':2}
for dirname, _, filenames in os.walk('./uk/csv'):
for filename in filenames:
vote_counter += 1
print(os.path.join(dirname, filename))
# Read title rows
title_df = pd.read_csv(os.path.join(dirname, filename),nrows=(3),skip_blank_lines=True,header=None)
# Read data rows
df = pd.read_csv(os.path.join(dirname, filename),skiprows=(10))
# Give each voting behaviour type an identifier from 0 to len(voting_features) - 1
df[vote_column].replace(voting_features, inplace=True)
#Replace the vote column name
vote_column_name = f'vote_{vote_counter}'
df=df.rename(columns={vote_column:vote_column_name})
# Map column name of vote to title -> allows retrieving what the vote was about
vote_column_to_title[vote_column_name] = title_df.iat[2,0]
if data.empty:
# if first file that is loaded set data equal to data from first file
data = df[[name_column, vote_column_name]]
else:
# merge data with already loaded data
data = data.merge(df[[name_column, vote_column_name]], on=name_column)
print(vote_column_to_title)
print(data)

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uk_analysis.py Executable file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import load_data as ld
import voting_analysis as va
# Load data
data = ld.load_uk_data().to_numpy()
X = data[:,2:]
# Train model
grid_h = 30 # Grid height
grid_w = 30 # Grid width
radius = 3 # Neighbour radius
step = 0.5
ep = 100 # No of epochs
model = va.train_model(X, grid_h, grid_w, radius, step, ep)
# Predict and visualize output
va.predict(model, data, grid_h, grid_w)

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voting_analysis.py Normal file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import numpy as np
from neupy import algorithms
from itertools import product
import matplotlib.pyplot as plt
def train_model(X, grid_h, grid_w, radius, step, ep):
inp = X.shape[1] # No of features (bills)
# Create SOFM
sofmnet = algorithms.SOFM(
n_inputs=inp,
step=0.5,
show_epoch=100,
shuffle_data=True,
verbose=True,
learning_radius=radius,
features_grid=(grid_h, grid_w)
)
sofmnet.train(X, epochs=ep)
return sofmnet
def predict(model, data, grid_h, grid_w):
X = data[:,2:]
# predicting mp positions
prediction = model.predict(X)
print(f'prediction: {prediction}')
# converting to x and y coordinates
ys, xs = np.unravel_index(np.argmax(prediction, axis=1), (grid_h, grid_w))
# plotting mps
plot_mps(data[:,0], xs, ys, data[:,1])
plt.show()
# plotting parties
plot_parties(xs, ys, data[:,1])
plt.show()
# Heatmap of weights
plt.figure()
weight = model.weight.reshape((model.n_inputs, grid_h, grid_w))
heatmap = compute_heatmap(weight, grid_h, grid_w)
plt.imshow(heatmap, cmap='Greys_r', interpolation='nearest')
plt.axis('off')
plt.colorbar()
plt.show()
def iter_neighbours(weights, hexagon=False):
_, grid_height, grid_width = weights.shape
hexagon_even_actions = ((-1, 0), (0, -1), (1, 0), (0, 1), (1, 1), (-1, 1))
hexagon_odd_actions = ((-1, 0), (0, -1), (1, 0), (0, 1), (-1, -1), (1, -1))
rectangle_actions = ((-1, 0), (0, -1), (1, 0), (0, 1))
for neuron_x, neuron_y in product(range(grid_height), range(grid_width)):
neighbours = []
if hexagon and neuron_x % 2 == 1:
actions = hexagon_even_actions
elif hexagon:
actions = hexagon_odd_actions
else:
actions = rectangle_actions
for shift_x, shift_y in actions:
neigbour_x = neuron_x + shift_x
neigbour_y = neuron_y + shift_y
if 0 <= neigbour_x < grid_height and 0 <= neigbour_y < grid_width:
neighbours.append((neigbour_x, neigbour_y))
yield (neuron_x, neuron_y), neighbours
def compute_heatmap(weight, grid_height, grid_width):
heatmap = np.zeros((grid_height, grid_width))
for (neuron_x, neuron_y), neighbours in iter_neighbours(weight):
total_distance = 0
for (neigbour_x, neigbour_y) in neighbours:
neuron_vec = weight[:, neuron_x, neuron_y]
neigbour_vec = weight[:, neigbour_x, neigbour_y]
distance = np.linalg.norm(neuron_vec - neigbour_vec)
total_distance += distance
avg_distance = total_distance / len(neighbours)
heatmap[neuron_x, neuron_y] = avg_distance
return heatmap
def plot_hoverscatter(x, y, labels, colors, cmap = plt.cm.RdYlGn):
fig,ax = plt.subplots()
ANNOTATION_DISTANCE = 5
TRANSPARENCY = 0.8
scatterplot = plt.scatter(x,y,c=colors, s=5, cmap=cmap)
annot = ax.annotate("", xy=(0,0),
xytext=(ANNOTATION_DISTANCE, ANNOTATION_DISTANCE),
textcoords="offset points",
bbox=dict(boxstyle="Square"))
annot.set_visible(False)
def update_annot(ind):
index = ind["ind"][0]
pos = scatterplot.get_offsets()[index]
annot.xy = pos
text = f'{labels[index]}'
annot.set_text(text)
annot.get_bbox_patch().set_facecolor(cmap(colors[index]))
annot.get_bbox_patch().set_alpha(TRANSPARENCY)
def hover(event):
vis = annot.get_visible()
if event.inaxes == ax:
cont, ind = scatterplot.contains(event)
if cont:
update_annot(ind)
annot.set_visible(True)
fig.canvas.draw_idle()
else:
if vis:
annot.set_visible(False)
fig.canvas.draw_idle()
fig.canvas.mpl_connect("motion_notify_event", hover)
#plt.show()
def plot_mps(names, xs, ys, party_affiliation):
# converting parties to numeric format
party_index_mapping, party_ids = np.unique(party_affiliation, return_inverse=True)
# add random offset to show points that are in the same location
ys_disp = ys + np.random.rand(ys.shape[0])
xs_disp = xs + np.random.rand(xs.shape[0])
parties = party_index_mapping[party_ids]
plot_hoverscatter(xs_disp, ys_disp, names + " (" + parties + ")", party_ids)
def plot_parties(xs, ys, party_affiliation):
cmap = plt.cm.RdYlGn
# converting parties to numeric format
party_index_mapping, party_ids = np.unique(party_affiliation, return_inverse=True)
# calculate average position of party
party_count = np.zeros(party_index_mapping.shape[0])
party_xs = np.zeros(party_index_mapping.shape[0])
party_ys = np.zeros(party_index_mapping.shape[0])
for x, y, party_id in zip(xs, ys, party_ids):
party_xs[party_id] += x
party_ys[party_id] += y
party_count[party_id] += 1
party_xs /= party_count
party_ys /= party_count
plt.figure()
party_colors=np.array(range(len(party_index_mapping)))
plt.scatter(party_xs, party_ys, c=party_colors, cmap=cmap)
# plotting labels
offset = 0.01
for x,y, party in zip(party_xs, party_ys, party_index_mapping):
plt.text(x + offset, y + offset, party)