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swap x and y axis of peak finder to fix image display (this might however cause issues with the registration)

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Hannes F. Kuchelmeister
2021-07-19 10:51:42 +02:00
parent 3920451644
commit b122389bad
1 changed files with 4 additions and 1 deletions
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5
situr/image/situ_image.py
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@@ -39,7 +39,10 @@ class PeakFinderDifferenceOfGaussian(PeakFinder):
img = img_as_float(img_array)
peaks = blob_dog(img, min_sigma=self.min_sigma,
max_sigma=self.max_sigma, threshold=self.threshold)
return peaks[:, 0:2]
# Swap x and y
peaks = peaks[:, [0, 1]] = peaks[:, [1, 0]]
return peaks
class SituImage: