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improve peak visualisation as it's now drawn in colour with one dark and one bright colour

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Hannes F. Kuchelmeister
2021-07-19 10:30:19 +02:00
parent c2b092e6ec
commit 3920451644
1 changed files with 10 additions and 3 deletions
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13
situr/image/situ_image.py
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@@ -174,10 +174,17 @@ class SituImage:
channel, focus_level) channel, focus_level)
img = Image.fromarray( img = Image.fromarray(
self.get_data()[channel, focus_level, :, :].astype(np.uint8)) self.get_data()[channel, focus_level, :, :].astype(np.uint8)).convert('RGB')
draw = ImageDraw.Draw(img) draw = ImageDraw.Draw(img)
width = 3
inner_radius = 5
outer_radius = inner_radius + width
for x, y in zip(peaks[:, 0], peaks[:, 1]): for x, y in zip(peaks[:, 0], peaks[:, 1]):
draw.ellipse((x - 5, y - 5, x + 5, y + 5), draw.ellipse((x - inner_radius, y - inner_radius, x + inner_radius, y + inner_radius),
outline='white', width=3) outline='navy', width=width)
draw.ellipse((x - outer_radius, y - outer_radius, x + outer_radius, y + outer_radius),
outline='yellow', width=width)
img.show() img.show()
return img return img